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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3965843_3966859_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3965843 - 3966859
Intron Length:
1017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGTGG
5'SS Class:
major
3'SS Sequence:
GTTTAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CGCTGTTTAAAT
Flanking Amino Acid:
DFSCPIKLHQDPKCPSRYHC
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
61.3
45.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.1
0.59
1
71.5
42.8
Minor 5ss
34.7
-1.7
3.5
46.4
49
Minor BPS
49.9
0.07
1.9
65.2
45.5

Associated Gene:

Gene:
NUP88
Ensembl Gene ID:
ENSAPLG00000015794
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016516
3958779 - 3971469
12691