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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3967216_3968807_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3967216 - 3968807
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TTTTCTTGAATG
Flanking Amino Acid:
HILCTKPLPCRQPAPIRGFW
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
71.9
0.55
1.4
76.06
35.8

Associated Gene:

Gene:
NUP88
Ensembl Gene ID:
ENSAPLG00000015794
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016516
3958779 - 3971469
12691