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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_396726_397091_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
396726 - 397091
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
GAGTACTGAGGT
Flanking Amino Acid:
NSQNGMNKDDKDRLIEQLYG
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
74.2
36.1
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
77.2
0.61
0.8
68.8
37.1
Minor 5ss
33.1
-1.9
3
43
37.7
Minor BPS
42.2
-0.5
2
56.23
45.2

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531