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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3970752_3970978_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3970752 - 3970978
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
CAATTGCATAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAATT
Flanking Amino Acid:
LEDLNYCREEKKSLREMAER
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
54.2
0.1
1.2
52.7
40.6
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
70.8
0.73
1.5
84.72
35.8

Associated Gene:

Gene:
NUP88
Ensembl Gene ID:
ENSAPLG00000015794
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016516
3958779 - 3971469
12691