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Intron Name: Anas_platyrhynchos_platyrhynchos_20_3971060_3971408_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3971060 - 3971408

Intron Length:

349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTGAGTGCA

5'SS Class:

strong_major

3'SS Sequence:

ATGAAGGATGAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAATTAA

U12 Branch Point Sequence:

AATTAAGCAACA

Flanking Amino Acid:

AKEKQEDIMNRKYFVASTLS

Intron Amino Acid Position:

433

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.7

80.2

27.1

Major BPS

67.7

0.44

58.3

38.4

Major PPT

46.6

-0.1

1.2

38.4

43.1

Minor 5ss

27.5

-2.6

32.5

42.3

Minor BPS

41.5

-0.6

2.4

58.07

40.6

Associated Gene:

Gene:

NUP88

Ensembl Gene ID:

ENSAPLG00000015794

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016516

3958779 - 3971469

12691