Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3977125_3979260_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3977125 - 3979260

Intron Length:

2136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTTCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAC

U12 Branch Point Sequence:

GTTTTACTAGCT

Flanking Amino Acid:

DFVKLSQTLQVQLERIRQAD

Intron Amino Acid Position:

822

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.94

0.8

78.3

31.1

Major BPS

68.8

0.47

1.2

63.4

Major PPT

78.3

0.64

0.9

73.9

36.8

Minor 5ss

28.5

-2.5

3.5

37.1

47.5

Minor BPS

48.1

-0

2.1

74.74

41.5

Associated Gene:

Gene:

RABEP1

Ensembl Gene ID:

ENSAPLG00000016012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041136

3974920 - 4012667

37748

ENSAPLT00000027513

3974920 - 4024714

49795

ENSAPLT00000016754

3977023 - 4009815

32793