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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3979378_3979991_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3979378 - 3979991
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTATG
5'SS Class:
major
3'SS Sequence:
TATTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTATACTTAAAC
Flanking Amino Acid:
EQLKKETAAKANLEQLVFEE
Intron Amino Acid Position:
783

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
72.7
44.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.1
0.74
0.8
81.5
35.9
Minor 5ss
43.5
-0.7
3
59.2
45.4
Minor BPS
69.7
0.6
1.6
78.2
36.5

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041136
3974920 - 4012667
37748
ENSAPLT00000027513
3974920 - 4024714
49795
ENSAPLT00000016754
3977023 - 4009815
32793