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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_397977_398372_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
397977 - 398372
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAC
U12 Branch Point Sequence:
AGGTCTTACACC
Flanking Amino Acid:
RLIQIPQLPENPPNFLRASA
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
60.5
0.26
1.1
70.3
34.5
Major PPT
76.7
0.6
0.8
68.1
32
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
46.8
-0.2
2
56.78
42.2

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384