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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3980091_3981044_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3980091 - 3981044
Intron Length:
954

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTTTTATTT
Flanking Amino Acid:
LERIKVEKEQLESSSQENLQ
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.1
0.68
0.9
76.6
37.5
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041136
3974920 - 4012667
37748
ENSAPLT00000027513
3974920 - 4024714
49795
ENSAPLT00000016754
3977023 - 4009815
32793