Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3981526_3982287_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3981526 - 3982287

Intron Length:

762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACAC

5'SS Class:

strong_major

3'SS Sequence:

ATCATTGATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

TAATCATTGATT

Flanking Amino Acid:

EDFILPEAAEELREMVLKYR

Intron Amino Acid Position:

668

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

68.4

36.7

Major BPS

80.4

0.76

80.3

31.8

Major PPT

69.3

0.44

66.2

43.8

Minor 5ss

31.6

-2.1

3.2

41.7

Minor BPS

64.2

0.53

1.6

78.14

37.9

Associated Gene:

Gene:

RABEP1

Ensembl Gene ID:

ENSAPLG00000016012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041136

3974920 - 4012667

37748

ENSAPLT00000027513

3974920 - 4024714

49795

ENSAPLT00000016754

3977023 - 4009815

32793