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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3986095_3988053_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3986095 - 3988053
Intron Length:
1959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATAGCCTGTATT
Flanking Amino Acid:
ETEWNLLQKEVQNAGNKLGR
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.2
0.55
0.8
65.9
36
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
48.7
-0
1.9
68.01
43

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027513
3974920 - 4024714
49795
ENSAPLT00000016754
3977023 - 4009815
32793
ENSAPLT00000041136
3974920 - 4012667
37748