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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3991214_3992174_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3991214 - 3992174
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTACTTGC
5'SS Class:
major
3'SS Sequence:
CATTGATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATGCATTCACT
Flanking Amino Acid:
QVEELKKKDQEDDDQQRLSK
Intron Amino Acid Position:
316

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.3
65.2
41.8
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
72
0.5
0.9
62.6
43
Minor 5ss
42.4
-0.8
2.6
54.2
42.8
Minor BPS
54.4
0.22
2.2
78.35
43.6

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041136
3974920 - 4012667
37748
ENSAPLT00000027513
3974920 - 4024714
49795
ENSAPLT00000016754
3977023 - 4009815
32793