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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3992354_3993168_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3992354 - 3993168
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTATG
5'SS Class:
major
3'SS Sequence:
TATTTTTGAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATTTTTGAATA
Flanking Amino Acid:
AEKLRKELHEVCHLLEQERQ
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.2
72.9
44.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
72.1
0.5
1
70.2
39.9
Minor 5ss
43.8
-0.7
2.9
59.8
44.7
Minor BPS
65.4
0.48
1.3
72.78
32.9

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041136
3974920 - 4012667
37748
ENSAPLT00000027513
3974920 - 4024714
49795
ENSAPLT00000016754
3977023 - 4009815
32793