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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_3996701_4002984_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3996701 - 4002984
Intron Length:
6284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
GCATTAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTATTCATAATT
Flanking Amino Acid:
EENLENEMKKAQEDAEKLRS
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
71.5
0.48
1
67.1
42.6
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
69.6
0.69
1.5
85.51
34.4

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041136
3974920 - 4012667
37748
ENSAPLT00000027513
3974920 - 4024714
49795
ENSAPLT00000016754
3977023 - 4009815
32793