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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4006640_4009799_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4006640 - 4009799
Intron Length:
3160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTACGGTGC
5'SS Class:
weak_major
3'SS Sequence:
GTTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CGTACCTTATCT
Flanking Amino Acid:
MAAFLFALLQRVAEL
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.2
48.9
42.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
38
-1.4
3.5
49.8
46.8
Minor BPS
64
0.52
1.7
77.62
44.4

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016754
3977023 - 4009815
32793