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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4006640_4012603_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4006640 - 4012603
Intron Length:
5964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CGTACCTTATCT
Flanking Amino Acid:
RESALSRLGGVALLQRVAEL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
64
0.52
1.7
77.62
44.4

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041136
3974920 - 4012667
37748