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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4006640_4024188_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4006640 - 4024188
Intron Length:
17549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTTTGTC
5'SS Class:
major
3'SS Sequence:
GTTTTATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CGTACCTTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
66.3
37.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.7
0.76
0.8
82.1
34.6
Minor 5ss
39.8
-1.1
3
53.3
43.8
Minor BPS
64
0.52
1.7
77.62
44.4

Associated Gene:

Gene:
RABEP1
Ensembl Gene ID:
ENSAPLG00000016012
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027513
3974920 - 4024714
49795