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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_400771_401108_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
400771 - 401108
Intron Length:
338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTGCTTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
AGGTTTATATCT
Flanking Amino Acid:
TVKLLFKLHSCLPADTLQGH
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.2
36.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
76.8
0.6
0.8
68.8
37.2
Minor 5ss
34.5
-1.8
2.8
48.2
40.4
Minor BPS
46.9
-0.1
1.8
63.34
41.1

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384
ENSAPLT00000037426
389232 - 417762
28531