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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_401250_403133_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
401250 - 403133
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCCTACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCCTCCCTACCA
Flanking Amino Acid:
LECELNLFQTVFSSLDMSRS
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
69.7
41.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
73.5
0.53
0.9
66.3
34.4
Minor 5ss
39.1
-1.2
3
51.7
45
Minor BPS
53.8
0.12
2
67.55
44.9

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384