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Intron Name: Anas_platyrhynchos_platyrhynchos_20_403196_403444_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

403196 - 403444

Intron Length:

249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

CCCTCTTCCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAA

U12 Branch Point Sequence:

ACTGCCCAACCT

Flanking Amino Acid:

DEAGESDVNNFFQLTVEMFD

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

60.6

38.2

Major BPS

49.1

-0

1.3

58.4

40.3

Major PPT

71.8

0.49

0.7

64.7

30.8

Minor 5ss

30.1

-2.3

3.1

38.5

40.7

Minor BPS

42.9

-0.4

2.2

62.36

47.5

Associated Gene:

Gene:

HIP1

Ensembl Gene ID:

ENSAPLG00000008219

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030367

389232 - 417762

28531

ENSAPLT00000026970

389232 - 417762

28531

ENSAPLT00000008712

389232 - 437615

48384

ENSAPLT00000037426

389232 - 417762

28531