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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4033568_4034133_F

Intron Information:

Intron Rank:
147253
Intron Class:
major
Intron Phase:
Intron Coordinates:
4033568 - 4034133
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGAAGG
5'SS Class:
major
3'SS Sequence:
CTCCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAA
U12 Branch Point Sequence:
AAGGGCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
60.1
44.8
Major BPS
60
0.25
1.3
63.9
40.2
Major PPT
84.9
0.78
0.7
79.7
25.7
Minor 5ss
34.1
-1.8
2.9
37.2
40.9
Minor BPS
40.3
-0.6
2
51.81
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029310
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029565
4032795 - 4042376
9582