About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4034186_4039911_F

Intron Information:

Intron Rank:
147254
Intron Class:
major
Intron Phase:
Intron Coordinates:
4034186 - 4039911
Intron Length:
5726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTCATGCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
67.9
37.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
90.1
0.9
0.6
88.5
20.9
Minor 5ss
29.9
-2.3
3.3
35.5
43.1
Minor BPS
42.4
-0.5
2.2
62.16
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029310
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029565
4032795 - 4042376
9582