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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4045714_4046615_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4045714 - 4046615
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTTCAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TACATCTTAACT
Flanking Amino Acid:
STEDTENLSLAHPLNKLKLV
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
66.3
0.37
1
66.5
33.2
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
73.5
0.82
1.3
81.58
39.8

Associated Gene:

Gene:
IFT22
Ensembl Gene ID:
ENSAPLG00000020497
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030194
4045418 - 4048964
3547