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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4047788_4048038_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4047788 - 4048038
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTAAGCTCACAG
Flanking Amino Acid:
AKVLLVGPREAGKSVLANFV
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
38.7
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
77.8
0.63
0.9
72.5
37.7
Minor 5ss
30.2
-2.3
3.3
36.8
47.7
Minor BPS
36.8
-1.1
2.1
38.38
44

Associated Gene:

Gene:
IFT22
Ensembl Gene ID:
ENSAPLG00000020497
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030194
4045418 - 4048964
3547