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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_406052_407319_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
406052 - 407319
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCGTATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
TTCTTCGTATCC
Flanking Amino Acid:
NELSDMSRMWGHLSEGYGQL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
74.5
0.55
0.9
66
39.9
Minor 5ss
34
-1.8
3.3
40.9
45.4
Minor BPS
50
-0
2.2
69.18
42.9

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000030367
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384