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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4063013_4086308_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4063013 - 4086308
Intron Length:
23296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
TTTCTTTCCACA
Flanking Amino Acid:
GSPGSGFASRRHWCHYTVTR
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
58.7
0.22
1.2
67
38
Major PPT
87.8
0.85
0.6
83.8
24.5
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
49
-0
1.9
68.33
38.3

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904
ENSAPLT00000035068
4062861 - 4234764
171904