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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_408239_409048_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
408239 - 409048
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GAA|ATATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GACCAGCCTCCAC|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
GTTTCCTTGACC
Flanking Amino Acid:
EVAVKEKHARTCILGTHHEK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
34
-0.9
3.4
50.4
41.8
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
36.1
-0.8
3.1
39.3
39.7
Minor 5ss
93.6
1.45
0.8
93.1
18.2
Minor BPS
85.4
1.1
1
87.08
29.7

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531
ENSAPLT00000008712
389232 - 437615
48384