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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_409113_417141_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
409113 - 417141
Intron Length:
8029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCCTTCCCATCT
Flanking Amino Acid:
AGAAMEAGKMTVSINKAINT
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
44.9
-0.3
2.1
64.08
46.3

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037426
389232 - 417762
28531
ENSAPLT00000026970
389232 - 417762
28531