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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_409113_437498_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
409113 - 437498
Intron Length:
28386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCCTTCCCATCT
Flanking Amino Acid:
AERESFERAQTVSINKAINT
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
62.3
41.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
28.5
-2.5
3.6
38.6
46.6
Minor BPS
44.9
-0.3
2.1
64.08
46.3

Associated Gene:

Gene:
HIP1
Ensembl Gene ID:
ENSAPLG00000008219
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008712
389232 - 437615
48384