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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4096137_4191408_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4096137 - 4191408
Intron Length:
95272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTTACATCATT
Flanking Amino Acid:
PGFTGSNCEEECMNCTRLAD
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
88.4
0.86
0.8
81
36.6
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
52.2
0.15
2.2
81.94
39.5

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035068
4062861 - 4234764
171904
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904