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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4210238_4211650_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4210238 - 4211650
Intron Length:
1413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
TGCCTCTGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
AATGCACTAACA
Flanking Amino Acid:
PGERGPAGPPGLLGPQGPRG
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.8
78.8
35.5
Major BPS
77.3
0.68
1
81.5
27
Major PPT
69.2
0.43
0.9
63.8
36.9
Minor 5ss
35.5
-1.6
2.8
45.4
42.6
Minor BPS
49.3
-0
2
65.41
40.2

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035068
4062861 - 4234764
171904
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904