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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4211804_4219939_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4211804 - 4219939
Intron Length:
8136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TGCTCTTTAACA
Flanking Amino Acid:
YSLQPTAEKENGEPQLASTV
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
73.7
0.53
0.9
69.1
34.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
79.3
0.92
1.1
79.83
36.4

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035068
4062861 - 4234764
171904
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904