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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4220033_4221532_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4220033 - 4221532
Intron Length:
1500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
TGATTCCTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
GTCTCCTTAAAC
Flanking Amino Acid:
RGAPGPIGPPGPPGASGPKG
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
71.2
0.48
1
63.7
42.6
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
74.7
0.75
1.4
76.66
39.1

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035068
4062861 - 4234764
171904
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904