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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4224075_4229966_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4224075 - 4229966
Intron Length:
5892

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGGTTT
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAT
U12 Branch Point Sequence:
GTCACATGGAGA
Flanking Amino Acid:
KGSKGDRGERGEPGKKGEEG
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
73.2
38.6
Major BPS
59.9
0.25
1.2
69
38.9
Major PPT
86.1
0.81
0.7
85.5
29.2
Minor 5ss
43.9
-0.7
3.4
61
44.7
Minor BPS
41.6
-0.6
2
49.99
40.6

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000652
4062861 - 4234764
171904