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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4230012_4231064_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4230012 - 4231064
Intron Length:
1053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGCATG
5'SS Class:
major
3'SS Sequence:
TTCCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
CTGATGTTAGTT
Flanking Amino Acid:
KGEEGDKGADGEGVQQLREA
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
74.7
41.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
88.7
0.87
0.6
84.2
23.8
Minor 5ss
45.4
-0.5
2.9
62.4
42.2
Minor BPS
43.6
-0.4
2.2
59.41
44.8

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035068
4062861 - 4234764
171904
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904