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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4231150_4234591_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4231150 - 4234591
Intron Length:
3442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTCCCGTGACT
Flanking Amino Acid:
LILEHMIGIHDSLSSIEPGS
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
86
0.81
0.7
80
25.6
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
60.2
0.4
2.1
80.72
41.3

Associated Gene:

Gene:
COL26A1
Ensembl Gene ID:
ENSAPLG00000000582
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025568
4062861 - 4234764
171904
ENSAPLT00000000652
4062861 - 4234764
171904
ENSAPLT00000035068
4062861 - 4234764
171904