About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4241826_4245275_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4241826 - 4245275
Intron Length:
3450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTATGCTTATAT
Flanking Amino Acid:
GAREEEKIIPATTHVTVMKG
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.6
0.8
0.8
77.7
36.3
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
54.6
0.22
2.1
78.23
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000709
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000831
4241669 - 4255289
13621