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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4248818_4252739_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4248818 - 4252739
Intron Length:
3922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
CAATCTATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
CATCTTGCAATC
Flanking Amino Acid:
GPNTLCEPMCRGNEDTKYSG
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
72.4
0.5
1
62.7
42.5
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
41.2
-0.6
2
48.11
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000709
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000831
4241669 - 4255289
13621