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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4252840_4253667_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4252840 - 4253667
Intron Length:
828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAA
5'SS Class:
major
3'SS Sequence:
CCTGATATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TGCTCACTAACA
Flanking Amino Acid:
KLVFEANGKKLNNGGKLTTC
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
70.4
35.3
Major BPS
69.8
0.49
1
61
37.5
Major PPT
74
0.54
0.9
69.7
40
Minor 5ss
31.1
-2.2
3.2
39.8
45.8
Minor BPS
55.7
0.17
2
70.45
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000709
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000831
4241669 - 4255289
13621