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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4253831_4254852_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4253831 - 4254852
Intron Length:
1022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CCCCTCTTATTT
Flanking Amino Acid:
ENTERNSTYVGNVAWMHVLA
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
85
0.79
0.8
77.1
37
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
49.2
0.02
1.6
59.89
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000709
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000831
4241669 - 4255289
13621