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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4289817_4306101_R

Intron Information:

Intron Rank:
145074
Intron Class:
major
Intron Phase:
Intron Coordinates:
4289817 - 4306101
Intron Length:
16285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCACAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTGCTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
61.8
0.27
1
55.8
38.3
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
59.5
0.29
2.2
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046233
4289631 - 4306906
17276