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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4299274_4299407_R

Intron Information:

Intron Rank:
145072
Intron Class:
major
Intron Phase:
Intron Coordinates:
4299274 - 4299407
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAGG
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GTTTCCATTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.4
45
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
87.5
0.84
0.6
85.4
21.9
Minor 5ss
37.1
-1.5
3.2
48.3
47.5
Minor BPS
60.7
0.42
1.9
82.14
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025453
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045157
4298383 - 4306142
7760