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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4313980_4314734_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4313980 - 4314734
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
GTTCACTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
ATGTTTGTAACA
Flanking Amino Acid:
TQADRFSQEEINQMFAAFPP
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
70.3
0.46
1
65.5
40.7
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
55.2
0.16
2
68.54
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001296
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001392
4313731 - 4335651
21921