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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4314784_4319861_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4314784 - 4319861
Intron Length:
5078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CACCCTTTAATC
Flanking Amino Acid:
PEGKGHIKADYIKEMLMTQA
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
0.9
79.6
29.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.4
0.55
1.1
72.3
42.5
Minor 5ss
45.6
-0.5
2.8
59.8
40
Minor BPS
61
0.33
1.3
60.37
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001296
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001392
4313731 - 4335651
21921