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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4319941_4323551_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4319941 - 4323551
Intron Length:
3611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCATTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAATT
Flanking Amino Acid:
FLTMFGEKLKGTDPEETILN
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.6
1.1
0.7
87.9
25.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
73.8
0.54
0.9
71.4
38.3
Minor 5ss
37
-1.5
2.6
46.5
41.8
Minor BPS
78.2
0.96
1.4
91.91
30.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001296
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001392
4313731 - 4335651
21921