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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4323657_4325112_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4323657 - 4325112
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATGAAAA
Flanking Amino Acid:
ADLRDTFAALGRLNVKNEEL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.9
0.58
0.9
69.6
36.1
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
51.3
0.04
1.8
67.83
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000001296
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001392
4313731 - 4335651
21921