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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_444293_444567_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
444293 - 444567
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATGAAAC
Flanking Amino Acid:
ALCCQVLSSPAAVNFSGPCC
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
76.7
33.9
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
82.5
0.73
0.8
73.6
36.3
Minor 5ss
29.1
-2.4
2.7
33.3
41.7
Minor BPS
51.5
0.03
1.8
64.87
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018222
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030888
444223 - 445230
1008