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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_444683_445130_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
444683 - 445130
Intron Length:
448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ACTCCTTTAACT
Flanking Amino Acid:
TSSHCPQPGVIFTTFKGKSF
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.3
0.82
0.7
81.2
30.4
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
76.4
0.91
1.2
83.73
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018222
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030888
444223 - 445230
1008