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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_44957_45289_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
44957 - 45289
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCGGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAG
U12 Branch Point Sequence:
TTTTTGTCAGCT
Flanking Amino Acid:
RNMLGQAAAPRDVPGEVEPT
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
60.9
0.27
1.7
71.4
45.1
Major PPT
69.9
0.45
1
64.4
36.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
49
0
2.4
79.74
42.4

Associated Gene:

Gene:
VPS37D
Ensembl Gene ID:
ENSAPLG00000025155
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047429
31520 - 45566
14047
ENSAPLT00000027936
42922 - 46011
3090
ENSAPLT00000005882
42922 - 46011
3090
ENSAPLT00000001797
31520 - 45566
14047