About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4563598_4576881_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4563598 - 4576881
Intron Length:
13284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.2
0.81
0.7
85.1
29.7
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
64.7
0.45
1.8
79.67
35.3

Associated Gene:

Gene:
CUX1
Ensembl Gene ID:
ENSAPLG00000002588
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046157
4538154 - 4682169
144016
ENSAPLT00000002695
4549767 - 4682169
132403